Fabrice Senger

Jonathan's "Opus Magnum" is finally out. Fundamental discovery. Congratulations!

Uni Bern: Assistant Professor with tenure-track for Quantitative Cell Biology Start date of employment: anticipated for August 2027

Please spread the word! 10 days left to apply for this #sciencejobs as Assistant Professor Tenure Track in Quantitative Cell Biology 👩‍🔬
@izb-unibern.bsky.social @unibe.ch! ohws.prospective.ch/public/v1/jo...
#QueerInSTEM #DisabledInSTEM #BlackInSTEM #WomenInSTEM #CarersInSTEM #AcademicSky #HigherED

In Basel, Switzerland in 1474 a chicken mistaken for a rooster was accused of witchcraft after laying an egg. The chicken was found guilty and burned to death.

Do not miss Pierre!

(I am absolutely not biaised 😅)

Registration is now open for the Cochin #QuPath training course for the manipulation of Fluo or color pyramid images, #histology or #microscopy, with the application of #deeplearning
November 5, 2025
November 12, 2025
@institutcochin.bsky.social
institutcochin.fr/formation-co...

Andrea Bucci and Laurent Le will run two workshops on building a custom #PhotonResolvedMicroscopy system and generating great #ImageScanningMicroscopy images.
Thanks @iitalk.bsky.social @erc.europa.eu @genoainstruments.bsky.social and #PNRR RNA&GeneTheraphy for support. See you at #Mifobio2025

with lots of pyclesperanto inside

I'm happy to release into the wild my new professional and personal website marcodallavecchia.gitlab.io/web/

I finally found some time to reorganize ideas and redo the framework with @quarto.org

You can read my first blog post on the website here!
marcodallavecchia.gitlab.io/web/blog/web...

#Mifobio2025
Focus on the module 4 :
👉 Multi-scale imaging of biological systems

We are delighted to welcome Anne BEGHIN @mbisg.bsky.social

Lecture - “Breaking scale: Image Analysis–Based AI to Streamline multilevels 3D quantitative Imaging and Tackle the vEM Challenge”

#GDRimabio

#Mifobio2025

Focus on the module 4 :
👉 Multi-scale imaging of biological systems

We are delighted to welcome Professor Timo BETZ
@uni-goettingen.de

Lecture - “Flow, Force & Form : Multimodal 3-D Microscopy for Living-Tissue Mechanics

👉 imabio-cnrs.fr/mifobio-2025/

#GDRImaBio #microscopy

🔬For 22 years, we have been organizing #Mifobio "Functional Microscopy for Biology" the @cnrs.fr thematic school.

🎓 Courses, Seminars, Round Tables, Workshops. The overall theme concerns #biological_imaging in its most interdisciplinary aspects.

👉 Program: imabio-cnrs.fr

#GDRImaBio #Mifobio2025

Packing-Driven Mechanotransduction: local crowding overrides adhesion and stiffness cues for YAP Activation in Cellular Collectives https://www.biorxiv.org/content/10.1101/2025.10.03.680214v1

So happy to join my first #Mifobio2025!
It’s going to be super fun. If you’re not coming this year, consider the next edition.
Looking forward to seeing old friends and meeting new ones.
#DevelopmentAtlas 🧪🔬

#Mifobio2025

Focus on the module 5:
👉 Physical measurements, control and handling -Mechanobiology

We are delighted to welcome Professor @salaita.bsky.social @salaitalab.bsky.social

Lecture - “May the Force Be Measured : mechano probes reveal the molecular forces generated by cell

#GDRimabio

Johns Hopkins sophomore student Florin Selaru develops a new scheme to deconvolve colors in histological sections for digital pathology.

It greatly outperforms traditional linear color deconvolution.

Congrats Florin!

Read his paper here: www.biorxiv.org/content/10.1...

How do dynamic forces influence symmetry-breaking in embryonic development?

Hi, I’m @dr-rajendra-s-negi.bsky.social & in this thread, I’d like to introduce some aspects of the interdisciplinary research on tissue dynamics.

And the eddies...

Far too much to keep track

Actually, I found it in some publications defined as an energy term...

Do you want to work with Michalis and us on a fun and ambitious LSFM, tracking and gamification project?
Apply!!

For the people using PIV : lots of parameters can be derived, mean speed, correlation length, Vrms,etc. Surprisingly, nobody never reports TKE, is there any reason for that ?

Mario Ledesma-Terrón, Diego Pérez-Dones, David Míguez and colleagues @cbm-csic-uam.bsky.social @ifimacuam.bsky.social present OSCAR, a framework to quantify 3D stacks with high cellular density.
journals.biologists.com/jcs/article-...

Image depicting the napari viewer in grid mode with scale bars and color bars enabled

napari 0.6.5 is out! 🚀

Rapid-fire highlights are: colorbar overlay, custom startup script, and better and prettier documentation! Check out the full release notes here: napari.org/dev/release/...

Interested in how cells respond when squeezed? Check the review paper just published by Laura Faure, @valeriaventurini.bsky.social and myself on this. Really thorough and clear revision by Laura and Valeria!

Intriguing

Beau statif

screenshots of some of the sample implementations

Screenshot of smartmicroscopy.github.io/implementations.html, showing an overview of collected implementation examples

Want to get started with smart microscopy? 🧠🔬
Check out our online repository with implementations from labs and industry -- lots of practical tips and links to sample code! smartmicroscopy.github.io/implementati...

More details in the ✨updated preprint!✨
www.biorxiv.org/content/10.1...

TopoSPAM: Topology grounded Simulation Platform for morphogenesis and biological Active Matter We present a topology grounded, multiscale simulation platform for morphogenesis and biological active matter. Morphogenesis and biological active matter represent keystone problems in biology with ad...

🤩👍🏼💪🏼 Meet #TopoSPAM - a high-performance simulation platform for biological morphogenesis with a friendly Python interface. @tudresden.bsky.social @csbdresden.bsky.social @mpi-cbg.de. Solve both continuous and discrete active mechanics! Released today: arxiv.org/abs/2509.24905

🚀 Skada v0.4.0 is out!

Skada is an open-source Python library built for domain adaptation (DA), helping machine learning models to adapt to distribution shifts.
Github: github.com/scikit-adapt...
Doc: scikit-adaptation.github.io
DOI: doi.org/10.5281/zeno...
Installation: `pip install skada`

Fantastic !