Fabrice Senger

Let's use the Celltrackscollab parser 😅

digged into it and actually i would say it handles old Trackmate xml files with particles and detections. This no longer the case for the latest trackmate xml files

Electrifying story from @ritamateus.bsky.social lab. @mpi-cbg.de @poldresden.bsky.social

inside front cover of issue 3 of Lab on a Chip: Electrolytic generation of microbubbles

On the inside front cover of issue 3 of Lab on a Chip:
Three-dimensional intestinal tube with a crypt-like uneven inner wall fabricated using electrolysis-generated microbubbles.
Hiroaki Onoe et al.
pubs.rsc.org/en/content/a...

Hi all,

Hope you're fine and safe

An important #announcement about #tyssue , a Python #epithelium modeling library :

github.com/DamCB/tyssue...

Please 🔁 this message to reach the few and far apart people that might be impacted

#openScience #scipy #biologicalphysics #modelling 🧪

has someone allready used this : github.com/sommerc/trac... , it takes trackmate xml files and allows for MSD calculation, in python

Adapting the OpenFlexure Microscope for Affordable Live-Cell Imaging https://www.biorxiv.org/content/10.64898/2026.02.02.703252v1

Image analysis is often treated as an individual skill—leading to irreproducible pipelines and bias. Sustainable #BioImageAnalysis must be an institutional responsibility: training, automation, standards, and GSP-aligned guidance. Read the full article on LinkedIn:

www.linkedin.com/feed/update/...

This is very cool. Overexpressing a stabilized Cyclin G, a transcriptional cyclin that regulates growth and the cell cycle, induces induces extreme wing size and shape variation. They perform a genome-wide screen for deficiencies that enhance or reduce this! 1/n 🧪

Please REPOST (“likes” don’t help in diffusion!) and consider applying: we work in such a fantastic context, we ask so interesting questions, and we have such a collegial and best-willing atmosphere… CRBM = Happy & Good Science

An Agent Revolt: Moltbook Is Not A Good Idea OpenClaw is a breakthrough AI assistant. Moltbook, its new social network for agents, is a security catastrophe waiting to happen.

'Cisco's security team put it plainly: "From a capability perspective, OpenClaw is groundbreaking. This is everything personal AI assistant developers have always wanted to achieve. From a security perspective, it's an absolute nightmare."'

www.forbes.com/sites/amirhu...

Anti-resonance in developmental signaling regulates cell fate decisions Human cells decode dynamics Wnt signals using an anti-resonant filter that suppresses intermediate-frequency inputs and is capable of redirecting developmental fate outcomes, including germ-layer spec...

In a really fun collaboration with Max Wilson’s lab at UCSB, we’ve developed a simple model that can capture the non-monotonic expression of Wnt target genes with respect to frequency in periodic (optogenetic) Wnt pulses: elifesciences.org/articles/107.... Great work Sam, Olivier, Naomi and Ryan :)

HumanBase: an interactive AI platform for human biology - Nature Methods Nature Methods - HumanBase: an interactive AI platform for human biology

HumanBase: an interactive AI platform for human biology

www.nature.com/articles/s41...

discover f-strings today ... progress

Skamrahl, M., Pang, H., Ferle, M., Gottwald, J., ..., Oswald, T. A., & Janshoff, A. (2021). Tight Junction ZO Proteins Maintain Tissue Fluidity, Ensuring Efficient Collective Cell Migration. Advanced science, 8(19), e2100478. #EpithelialMechanics
buff.ly/CB2FSa7

has someone any hint towards a segmentation strategy combining segmentation results, as for example given by cellpose, and active contour refinement ?

🧪 We are excited to share this novel open access paper on Phasor Mixing Coefficient to analyze colocalization, developed by folks @i2janelia.bsky.social and @aicjanelia.bsky.social. This is also the first technical paper jointly published with our sister imaging center @malacridalab.bsky.social!

it was very interesting, particularly with respect to 3D photomanipulation

you may have a look here : confocal-microscopy-list.275.s1.nabble.com/Help-with-st....

This weekend we projected cells and filaments on the roof of the @museeorsay.bsky.social in Paris, then we contracted it with a pinch of myosin.
And it was fabulous!

Grateful to have been part of this art/science project & thx to @manuelthery.bsky.social @lblanchoin.bsky.social & the CytoMorphoLab

The missing data for intelligent scientific instruments - Nature Methods Most scientific instruments currently discard rich streams of commands, data and metadata from which AI systems could learn to conduct experiments with expert-level decision-making and troubleshooting...

A Comment discusses how commands, data, and metadata currently discarded by scientific instruments could be used to train AI systems to learn to conduct experiments. @henrypinkard.bsky.social @nilsnorlin.bsky.social

www.nature.com/articles/s41...

Cytoplasmic crowding acts as a porous medium reducing macromolecule diffusion | PNAS Intracellular transport of macromolecules is crucial for the proper functioning of most cellular processes. Although intracellular crowding is know...

Happy to highlight our collaborative work from our @ijmonod.bsky.social team with @destriano.bsky.social, B. Goyeau and M. Chabanon.
Cytoplasmic crowding acts as a porous medium that hinders macromolecular diffusivity.
Plus: a clever way to measure cell volume.
www.pnas.org/doi/10.1073/...

and certainly in you Buzz!

Huge congrats to @manuelthery.bsky.social and all the Cytomorpho lab. The "Living Architectures" performance at @museeorsay.bsky.social was breathtakingly beautiful

Analyzing single-molecule dynamics with both complex types of motion and complex transition kinetics: Benchmarking of ExaTrack https://www.biorxiv.org/content/10.64898/2026.01.22.700663v1

Place aux jeu !

So excited to share the preprint with the bulk of my PhD work in the Beach @myosincity.bsky.social and Oakes @pwoakes.bsky.social Labs at Loyola University Chicago! We investigate the structure, recruitment, and function of septin networks around the nucleus. A thread:
doi.org/10.64898/202...

Was a really cool presentation.

and here is a nice list of software you can use instead of USinans ones: disconnect.blog/getting-off-...
(and also, are there still some people that wants to go on holiday in the USA????)

Jeanne et le baron, bras dessus dessous,visiterent tout, sans omettre un coin, puis ils se promenerent lentement dans les longues avenues de peupliers, qui enfermaient ce qu'on appelait le parc. Maupassant. Une vie.