László Tora's Avatar

László Tora

@tlaszlo.bsky.social

Transcription regulation, how genes are turned on or off, transcriptional cofactors, general transcription factors and core promoters.

452 Followers  |  240 Following  |  19 Posts  |  Joined: 17.11.2024  |  2.0103

Latest posts by tlaszlo.bsky.social on Bluesky


This story started during my post-doc with @tlaszlo.bsky.social while looking at TAFs isoforms for another project. Striking that a fundamental component of the basal transcription machinery can undergo such species-specific (rather drastic) evolutionary innovations. Thanks to everyone involved!

20.01.2026 11:59 — 👍 1    🔁 1    💬 1    📌 0

Check out our preprint where we describe, characterize and trace the origin of a novel human-specific isoform of TAF8, a scaffold subunit in TFIID. We were surprised to discover that TAF8 recently underwent genetic changes generating a truncated isoform with altered properties in humans!

20.01.2026 11:59 — 👍 6    🔁 3    💬 1    📌 0

Thanks Andrea and everybody who participated!

20.01.2026 16:28 — 👍 1    🔁 0    💬 0    📌 0
A recently evolved TAF8 isoform arising from an Alu insertion increases TFIID assembly complexity in the human lineage Despite its centrality in regulating RNA polymerase II transcription in all eukaryotes, the TFIID general transcription factor exhibits several layers of variability across different tissues and developmental stages, representing an underexplored hub of evolutionary innovation. Here, we describe a novel short isoform of TAF8 (TAF8s) — a TFIID scaffold subunit — which evolved from the use of an intronic polyadenylation site (iPAS) in the human lineage. Comparative genomics analyses show that the emergence of TAF8s expression in the human lineage coincides with minute DNA changes in the iPAS at the edge of a FLAM-C Alu element that inserted into intron 5 in the common ancestor of anthropoid primates (Simiiformes). The human-specific TAF8s isoform lacks nearly half of the canonical CDS, is widely expressed across human tissues, and constitutes a substantial fraction of the TAF8 transcript pool. TAF8s is translated into a truncated protein isoform that lacks the nuclear-localization signal and localises in the cytoplasm. TAF8s interacts with its histone-fold partner TAF10 and other core TFIID subunits, while entirely losing its interactions with TAF2, thus giving rise to alternative TFIID sub-complexes in human cells. Our study suggests that the TFIID complex underwent a recent diversification through a stepwise evolutionary acquisition of complexity in the TAF8 locus in the human lineage, leading to the expression of a novel truncated pan-isoform that might work as a modulator of TFIID assembly. We discuss the ramifications of our findings in TFIID complex diversification, its evolvability, and the genetics of TAF-related congenital disorders. ### Competing Interest Statement The authors have declared no competing interest. Fondation ARC pour la Recherche sur le Cancer, ARCPOST-DOC2021080004113 Agence Nationale de la Recherche, https://ror.org/00rbzpz17, ANR-PRCI-19-CE12-0029-01, ANR-20-CE12-0017-03, ANR-22-CE11-0013-01_ACT Fondation pour la Recherche Médicale, EQU-2021-03012631 NIH Common Fund, https://ror.org/001d55x84, R35GM139564 NSF, 1933344

Read our great story at doi.org/10.64898/2026.01.19.699933

20.01.2026 16:26 — 👍 0    🔁 0    💬 1    📌 0

High-resolution binding data of TFIID and cofactors show promoter-specific differences in vivo https://www.biorxiv.org/content/10.64898/2025.12.22.691305v1

23.12.2025 14:32 — 👍 5    🔁 3    💬 0    📌 0
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RNA polymerase II initiation factors show different dynamic behaviour upon induced transcription in live cells Transcription by RNA polymerase II (Pol II) requires the ordered action of general transcription factors (GTFs) forming the pre-initiation complex (PIC). How these events unfold kinetically remains un...

Read our new preprint where we uncover a hierarchy in human PIC assembly and establish a quantitative framework that connects factor exchange kinetics to the regulation of Pol II activity in living human cells. doi: doi.org/10.64898/202...
By A. Oravecz and our collaborators @molinalab.bsky.social

24.12.2025 13:35 — 👍 24    🔁 12    💬 0    📌 0

Intrigued by a long-standing conundrum in small RNA biology—how nuclear Argonaute proteins silence transposons when they *need* target transcription for their own recruitment—we studied the piRNA pathway.

And found a hidden RNA-decay axis from Piwi to the RNA exosome.

22.12.2025 18:14 — 👍 98    🔁 42    💬 3    📌 5

All of this was spearheaded by the exceptional experimentalist & scientist @changweiyu.bsky.social who came with a strong background in transcription from @tlaszlo.bsky.social and developed into a remarkable RNA biologist.

22.12.2025 18:14 — 👍 6    🔁 2    💬 1    📌 0
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Please RT 📧
Registration open for ➡️"Summer School on Chromatin Biology" Our 2 weeks hands on expedition 🧪👩‍💻August 2026. 3. edition. Learn CUT@Tag, CUT@Run, ChIPseq, ATACseq AND to analyse your own data at @helmholtzmunich.bsky.social Daily letures by experts in the field !

▶️ shorturl.at/jrA8i

09.12.2025 11:59 — 👍 11    🔁 11    💬 1    📌 0
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Structure of the transcriptional co-activator SAGA complex (from fungus Chaetomium thermophilum), including the histone acetyltransferase module #cryoEM

www.cell.com/molecular-ce...

21.11.2025 11:00 — 👍 12    🔁 2    💬 0    📌 0
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Enhancer-promoter compatibility is mediated by the promoter-proximal region Gene promoters induce transcription in response to distal enhancers. How enhancers specifically activate their target promoter while bypassing other promoters remains unclear. Here, we find that the p...

What is a promoter? And how does it work?

We very happy to share our latest work trying to understand enhancer-promoter compatibility.
I am very excited about the results of @blanka-majchrzycka.bsky.social, which changed the way I think about promoters

www.biorxiv.org/content/10.1...

16.10.2025 15:06 — 👍 171    🔁 74    💬 2    📌 6
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Nobel Laureate Professor Sir John Gurdon dies aged 92 It is with great sadness that the University shares the news of the death of Professor Sir John Gurdon, founder of the Gurdon Institute.

Today it was announced that Sir John Gurdon passed away.
His ground-breaking discovery was that differentiated cells can be reprogrammed. He was a creative and distinguished developmental biologist, a kind person with a great inquisitive mind and original ideas
www.cam.ac.uk/research/new...

08.10.2025 11:56 — 👍 3    🔁 3    💬 1    📌 0
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With self-deprecating humor, Sir John loved to tell the story of his Biology teacher (1949)

08.10.2025 12:10 — 👍 1    🔁 1    💬 0    📌 0
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Novel insights into the structure and evolution of the human SAGA complex by affinity-ligand purification Human SAGA is a 20-subunit complex that stimulates transcription and is essential for development. The most prominent addition to SAGA in metazoans compared to yeast is a 150kDa splicing-factor module...

Read the new version of our manuscript doi.org/10.1101/2025...

23.09.2025 19:02 — 👍 0    🔁 0    💬 0    📌 0
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FEBS Advanced Lecture Course: 6th Danube Conference on Epigenetics The FEBS Advanced Lecture Course: 6th Danube Conference on Epigenetics will take place 19–22 October 2026 in Budapest, Hungary. Here we give a taste of the scientific content, flag some of the speaker...

Do not forget to apply to the FEBS Advanced Lecture Course: 6th Danube Conference on Epigenetics (19–22 October 2026, Budapest, Hungary. Will be a great meeting as always. Check out the site: network.febs.org/posts/febs-a...

10.09.2025 14:24 — 👍 10    🔁 4    💬 0    📌 0
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Rethinking RNA-binding proteins: Riboregulation challenges prevailing views RNA-binding proteins (RBPs) are best known as effectors along the entire gene expression pathway and as constituents of RNA-protein machines such as t…

www.sciencedirect.com/science/arti...

06.09.2025 05:56 — 👍 20    🔁 11    💬 0    📌 0
Current practices in the study of biomolecular condensates: a community comment - Nature Communications The realization that the cell is abundantly compartmentalized into biomolecular condensates has opened new opportunities for understanding the physics and chemistry underlying many cellular processes1...

"In our view, it [hexanediol] should thus be avoided and not be used as evidence for the formation of an assembly via phase separation or the fluid-like nature of a condensate in vitro or in vivo." doi.org/10.1038/s414...

21.08.2025 15:38 — 👍 10    🔁 3    💬 0    📌 0
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Cotranslational assembly confers specificity for in vivo target heterodimerization of paralogous H2B-like TAF12 proteins in the human fungal pathogen Candida albicans The fidelity of assembly of multiprotein complexes is essential for the formation of stable and functional protein complexes that are critical for cell growth and survival. In this context, TBP-associ...

Read this interesting preprint from the lab of Krishnamurthy Natarajan: Cotranslational assembly confers specificity for in vivo target heterodimerization of paralogous H2B-like TAF12 proteins in the human fungal pathogen Candida albicans

doi: doi.org/10.1101/2025...

29.08.2025 15:24 — 👍 2    🔁 0    💬 0    📌 0

Could you add me please. Thanks. László Tora

29.08.2025 07:40 — 👍 0    🔁 0    💬 1    📌 0

One more movie!
Using the RL algorithm (from pnas.org/doi/10.1073/...),
@masaashimazoe.bsky.social analyzed our nucleosome tracking data and classified them by their mobility.
Hotter color = faster motion (Slow🔵→ 🟢 → 🟡 → 🟠 Fast)

29.08.2025 00:36 — 👍 46    🔁 16    💬 2    📌 0
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Affinity-ligand purification of native human low-abundance multi-protein complexes for structure determination In human cells, large multi-protein transcription co-activators, such as chromatin remodelers or histone acetyltransferases, play critical roles in gene-expression regulation and are often implicated ...

Check out our new collaborative preprint about Affinity-ligand purification of native human low-abundance multi-protein complexes doi.org/10.1101/2025...

12.08.2025 07:30 — 👍 20    🔁 11    💬 1    📌 0

Exquisite work. Well done to the whole team.

28.05.2025 05:33 — 👍 10    🔁 1    💬 0    📌 0
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🚨 New preprint out! Do you think Single Molecule Footprinting and Fiber-seq are super cool but aren't sure how to unlock their full potential? HiddenFoot can help you: www.biorxiv.org/content/10.1...

17.05.2025 17:00 — 👍 20    🔁 5    💬 0    📌 0
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Friday we celebrated my 40 years of scientific career in France, with present and past lab members and many friends. It was a fantastic day full of emotions, memories and great science. Thanks for making the day so memorable !

01.05.2025 07:08 — 👍 15    🔁 3    💬 3    📌 0
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The importance of moving away from bulk! Occupancy of Pol II at promoters is dramatically different between fly and mouse cells! When looking single molecule! Proud of the team! @kasitc.bsky.social @molinalab.bsky.social doi.org/10.1038/s443...

02.04.2025 08:47 — 👍 115    🔁 37    💬 2    📌 1
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Two more weeks to send us your abstract! >20 abstract selected talks. Priority to junior scientists and cool biology on gene regulation (DNA/RNA/protein). Come to meet the world leaders in single molecule genomics and single molecule imaging! Help shaping the future of the field in the workshops!

26.03.2025 12:17 — 👍 14    🔁 5    💬 0    📌 0

👍

24.03.2025 07:52 — 👍 0    🔁 0    💬 0    📌 0

PMID: 40106549, DOI: 10.1126/sciadv.adr1492

21.03.2025 17:27 — 👍 0    🔁 0    💬 0    📌 0

Read our collaborative paper
@longchrom.bsky.social and @molinalab.bsky.social
showing that disruption of NuA4 and ATAC coactivator complexes cause gene-specific transcript buffering, suggesting that cells dynamically adjust RNA export/degradation to sustain cellular homeostasis.

21.03.2025 17:27 — 👍 11    🔁 6    💬 3    📌 0
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Safeguarding the future of biomedical science in the United States NIH’s abrupt decision to cap indirect cost reimbursement at 15% threatens the critical infrastructure supporting groundbreaking biomedical research in the United States. This policy jeopardizes Americ...

www.cell.com/cell/fulltex...

01.03.2025 17:36 — 👍 4    🔁 1    💬 0    📌 0

@tlaszlo is following 20 prominent accounts