Physicist developing machine learning applications for bioimage analysis, and physics-based computational models for biological systems - focused on embryonic development and (liver) tissue analysis. MPI-CBG and Uni Konstanz alumnus. PI at UDLA
A community for computational practitioners working in volume electron microscopy (vEM)
Website: https://www.ccp-volumeem.ac.uk/
Join our mailing list at https://bit.ly/ccp-volume-em
Postdoc, antisense oligomers, computational (micro)biology, antibiotics, 🦠bacteria🦠, microbiome, immunology, AMR, global health, statistics.
he/him
https://linkedin.com/in/jakob-jung/
https://github.com/jakobjung
https://mstdn.science/@jakobjung
A microscopy core facility at Harvard Medical School, formerly the NIC. Director: Jennifer Waters | Associate Directors: Talley Lambert & Anna Jost | Fellows: Federico Gasparoli & Eva de la Serna. We specialize in microscopy, coffee & cats. Posts by JW.
BioImage Analysis Lead at AIC Janelia
International network of young scientists sharing imaging and analysis challenges in a friendly, peer-based space. We offer flexible learning via watch parties, roundtables, troubleshooting sessions and expert-led events.
https://gerbi-gmb.de/teams/ymia/
Research Software Engineer in bioimaging // I run the Human Organ Atlas (@humanorganatlas.bsky.social) // cyclist // walker
Digital pathology / Image Analysis / Microscopy / Neuroscience
Escape dependency hell with Pixi - your new favorite package manager!
Discord: https://discord.com/invite/kKV8ZxyzY4
Empowering students & researchers to make Open Science through: Curated Resources, Free Events and Individual Support.
Supported by the Tanenbaum Open Science Institute (TOSI) at The Neuro, Montréal, Canada
Website: https://tinyurl.com/2jd6th37
PhD Student at Monash University | The Clive and Vera Ramaciotti Centre for Cryo-EM | Utilizing multi-modal volume imaging systems to uncover the developmental changes in habenular fasciculature.
All about the research and people of VRVis. Science Communication. Posts in English and German.
PhD student at Karolinska Institutet and Scilifelab | Cell physics
https://www.csi-nano.org/
We make free, open-source software for data scientists like the RStudio IDE.
We're formerly known as RStudio. You can always download our open-source IDE here. https://posit.co/download/rstudio-desktop/
cog psych phd, table displayer, plant enthusiast.
data science tools @posit.co.
senior advisor at CodeForPhilly.
We build diverse communities that support free and open Python tools for processing scientific data. We also build technical skills needed to contribute to open source and that support open science. Join our global community: https://linktr.ee/pyopensci
Enabling biological and biomedical image data sharing by reaching consensus together with the global imaging community on metadata harmonization and ontology use
Neuroscientist exploring small nervous systems to understand principles of neural function @ Imperial College London
Science journalist in my second life
How do molecules and cells create life? Follow @biozentrum.unibas.ch for the latest news on research & education.
Community-driven & collaboratively developed open source guides for Data Science & Research: http://the-turing-way.org 📚
Light-sheet microscopes for large samples. Open source hardware and software. Run by @nvladimus.bsky.social and @voigtvision.bsky.social
Overview: www.mesospim.org
Mailing list: http://eepurl.com/hPBRhj
Forum: forum.image.sc/tag/mesospim
Behavioural and Evolutionary Ecologist |
PhD Researcher @zslscience.bsky.social & @uclcber.bsky.social | Interested in sexual selection, mate choice, courtship behaviour, colour, parental care | Professional frog-botherer | #FirstGen | #HERper | (she/her)
Biologist. Marmoset behaviour @DPZ 🐒🇬🇧🇩🇪
Biologist interested in how embryonic development evolves #EvoDevo • Assistant Professor at UFMG • Website: https://brunovellutini.com • Pronouns: he/him
Microscopy. Computer vision. Cell cytoskeleton.
King's College London
Physicist having a go at biology, EMBO postdoctoral fellow @UCL in the Mao group, @EMBL alumna
The UCL BioImage Interest Group (BIIG) runs talks and events centred on bioimaging and bioimage analysis. All are welcome to join our monthly hybrid seminars: https://tinyurl.com/ucl-biig
London-based neuroscientist 🧠 & research software engineer 💻 developing free and open-source tools for studying brains & behaviour, @neuroinformatics.dev @sainsburywellcome.bsky.social at UCL.
Committed to open, collaborative, and reproducible science.
PhD candidate at Liverpool John Moores University researching comparative biomechanics
Nonprofit advancing discovery through rapid, free sharing of scientific communications. New home of bioRxiv and medRxiv.
OME is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.
https://www.openmicroscopy.org/
Open Code = Better Science NumFOCUS is a 501(c)(3) nonprofit that supports and promotes world-class, innovative, open source scientific computing.
Communicative mind between biology and computer science. http://scads.ai / uni leipzig
CMS master student tu dresden #bioimageanalysis
👩💻 https://github.com/marabuuu
✏️ https://focalplane.biologists.com/author/marabuuu/
Physicist by training, working in computational neuroscience at the @dzne.science. Interested in how neural dynamics and learning shape brain function and behavior, using modeling and data analysis.
🌍fabriziomusacchio.com
🐘mastodon.social/@FabMusacchio
Deep Learning | Remote Sensing
PhD in Bioscience Engineering
☁️ cloud segmentation 🌍 land surface classification
@ VITO, Belgium
🇪🇺 LCFM project
🇬🇷 -> 🇸🇪 -> 🇧🇪
Biomedical Engineer 🤓 Now PhD student at the CMCB Lab, SciLifeLab. Learning how to gain knowledge from images 🦠🔬with AI 💻
Postdoctoral EMBO fellow @ISTA in @HippenmeyerLab 🧠🧪🥼
Neuroscientist @ ISTA
Thrilled about neurodevelopment, progenitors, lineage progression but also art, cultures and food!
Synaptic Physiologist & MD. PostDoc with P. Jonas @istaresearch.bsky.social Investigates nanoscopic structure-function of synapses. Dedicated to hippocampus, bicycles & mountains.
We build open source computational neuroanatomy software that works across species.
https://brainglobe.info
Posts by @adamltyson.com
PhD student in the field of computational microscopy and spatial omics.
Hunting for new antibiotics with deep learning at @pasteur.fr 🧫 | Previously @crick.ac.uk and 🎓 @imperialcollegeldn.bsky.social
Bioimage analysis and mathematical modelling, mainly in developmental biology. Research engineer @CNRS.bsky.social @pasteur.fr
Reproducibility for Everyone! Enabling researchers worldwide to adopt best practices in #reproducibility and teach others through workshops. Join us! #R4E
repro4everyone.org
Co-founder, core developer, and steering council member of @napari.org
Also other FOSSy and Science-y things.
I prefer Mastodon (profile at https://fosstodon.org/@jni) but begrudgingly checking things out here. 😂
Research group lead by @henriqueslab.bsky.social at @itqbnova.bsky.social
Combining #AI with #superresolutionimaging to push the boundaries of optical cell biology #SMLM #SRRF
Mathematician facing biomedical image processing challenges 💻🔬🧚♂️🦄
https://henriqueslab.org/pages/egdmariscal
@embo.bsky.social fellow at @henriqueslab.bsky.social @aiopticalbiolab.bsky.social
Former @arratemunoz.bsky.social @deniswirtz.bsky.social
Bioimage analysis, informatics, and cephalopod enthusiast.
UAB MD/PhD ‘30
Views are my own
Research Scientist in Cell and Computational Biology at Helmholtz Munich | Creator of Cell-ACDC and SpotMAX | Excited about mitochondrial DNA and AI-driven bioimage analysis | Dad of 2
Scientist, serial entrepreneur & angel investor. AI enthusiast & practitioner. Staff Scientist@ETH Zurich, Co-founder@Tooploox Research, CSO@Cat-astrophe Games.
The Software Sustainability Institute is the first organisation in the world that was dedicated to improving software in research.
Bioimage Analyst. I help people turn pictures into numbers. Overly passionate about documentation and FAIR data. Senior Staff Scientist in the Cimini Lab at the Broad. I also read, knit, sew, bake, and herd cats.
he/him
Director of Curriculum at The Carpentries. Views my own. Sorry I haven't replied to your email.
"I only know that hearts made of stone will rarely sail far and may never reach home" - Chuck Ragan
The Carpentries: Software Carpentry, Data Carpentry and Library Carpentry. An open global community teaching the skills and perspectives to turn data into knowledge
The leading open source orchestrator for containerized, data-intensive pipelines on any infrastructure at any scale. From @seqera.io
A community effort to collect a curated set of analysis pipelines built using Nextflow.
biology 🧬, microscopes 🔬, and computers 🖥️. Preferably all at once.
The Institute of Science and Technology Austria (ISTA) is dedicated to cutting-edge basic research and graduate education.
www.ista.ac.at
Quantitative Imaging: From Acquisition to Analysis course at Cold Spring Harbor Laboratory / Posts by QI Instructors & TAs
Applications for QI 2026 are due 1/30!
https://meetings.cshl.edu/courses.aspx?course=C-QICM
We develop, disseminate & provide access to advanced #microscopy technologies 🔬for #lifesciences #research
📍 30 core facilities
💡80 R&D teams
A professional and social society for all bioimage analysts in Australia. A subcommittee of Light Microscopy Australia (LMA), which is a special interest group of Australian Microscopy and Microanalysis Society (AMMS)
https://ausbias.org/
Software and ML Engineer. PhD in Biomedical Engineering. Python and Bio-Image Analysis expertise. 👨👩👦💻🏊♂️🕹🏞🐱
Light microscopy at Bruker Fluorescence Microscopy division.
#lightsheet #multiphoton #superresolution #screening
Cell biologist in my previous life. Alumnus @mpicbg.bsky.social
@turkubioscience.bsky.social
We are the light and electron microscopy team of several research institutions in Dresden enabling imaging related research.
The Galaxy Project powers global life sciences analytics by turning the world’s most advanced cyberinfrastructure into a free, browser-based analysis platform for everyone. https://galaxyproject.org/
We are dedicated to fostering community for data visualization professionals.
Visualize, share, segment, and annotate your large 3D images online.
I develop fluorescence based dyes and labeling reagents to visualize the complex lives of cells.
Research Software Engineering team at the Sainsbury Wellcome Centre and Gatsby Computational Neuroscience Unit, UCL. We build open source software for neuroscience and machine learning.
https://neuroinformatics.dev
Posts by @adamltyson.com
Dr. Leafbeaver, DS at Calico.
You can't spell imaging without "im aging" and boy am I.
Organelle enthusiast.
Creator of Nellie and Mitometer.
I'm a physicist; I invent techniques to measure and control biological systems.
Homepage: andrewgyork.github.io
Microscopy core director MIT. Cell biology. Amateur musician: mandolin family and trombone. Cambridge MA
(he/him) Light microscopy scientist interested in developing and deploying better live-cell fluorescence microscopy technology. Tweets about microscopy🔬, cell biology, and optics. Conflicts of interest: http://tinyurl.com/y25ctubo
Imaging scientist, light-sheet aficionado, #mesoSPIM developer, open source contributor. Building cool microscopes for cool people.
www.mesospim.org
www.github.com/nvladimus
Turku Bioimaging coordinates imaging in Turku and in Finland (via Euro-BioImaging Finalnd). Part of the MSc Programme in Biomedical Imaging. Image data analysis and management service.
Website: https://www.bioimaging.fi/
Research Software Engineer at UCL ARC (formerly postdoc at British Museum) | Microscopy, image analysis & software development | @KMeech@fosstodon.org
Chemist at HHMI's Janelia Research Campus. Passionate about designing, building, and giving away fluorescent dyes to illuminate biological systems. Striving to be positive about all things chemistry (except ChemDraw).
ORCID: 0000-0002-0789-6343
Lab head @HHMIJanelia
neuroscience, deep learning, large-scale recordings
#Kilosort, #Suite2p, #Cellpose, #Rastermap, #Facemap
n-dimensional image viewer for Python
Open-source scientific and technical publishing system brought to you by posit.co.
github.com/quarto-dev/quarto-cli
bioimage analysis, NEUBIAS, GloBIAS
https://www.globias.org/
Pushing the limits of image resolution and quality with #deconvolution, restoration, visualization and analysis.
Test Huygens from: http://svi.nl/download
I am a Software Architect for AI Solutions, Python Fan, Microscopist Image Analyst and really like Skiing.
Science is like magic but real.
The bluesky account is operated by http://quarep.org/impressum. Privacy policy: https://quarep.org/about/privacy-policy/
Python library for creating static, animated, & interactive visualizations. Chat w/ us @ https://discourse.matplotlib.org/
Sponsored by NumFocus
Illuminating math and science. Supported by the Simons Foundation. 2022 Pulitzer Prize in Explanatory Reporting. www.quantamagazine.org
The Imaging & Optics Facility @ Institute of Science andTechnology Austria (ISTA) supports scientists by providing state-of-the-art services in advanced microscopy applications, image analysis, flow cytometry and optical development solutions
Biologist & microscopist who exchanged the pipette for a pen 🖊️ #sciart #cartoons
website: https://falk-illustrations.de/
Some of my work is available under a CC BY 4.0 license:
https://github.com/zarr-developers/zarr-illustrations-falk-2024
Ass. Prof & Director Goeddel Family Technology Sandbox; CZI Imaging Scientist; Hard-of-hearing; Follows≠endorse; ❤️ organelles/deep-learning/cochlea/neurons
Imaging facility located in Bordeaux. We offer service in light and electron microscopy, and in image treatment and analyse.
The Imaging Core Facility of the Biozentrum is a technology platform for the use of light microscopes and users support.
AI and tissue clearing-based technologies for health.
Director at Helmholtz Munich, Full professor at LMU Munich, and CEO of Deep Piction (@deeppiction.bsky.social)
We’re🇩🇪🇹🇷🇭🇷🇨🇳🇮🇹🇮🇳🇸🇮🇴🇲🇨🇱🇭🇺🇧🇬🇺🇦🇷🇴🇦🇹🇹🇼🏳🌈
PhD Candidate at @cppape.bsky.social lab.
